PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000077.1_g00020.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 255aa MW: 26970.3 Da PI: 10.5223

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000077.1_g00020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.9	3.7e-38	33	125	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s+s + Itr_sc000077.1_g00020.1 33 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSVRNSSS--TT 116 79******************************************************************88832222222222..11 PP TCP 88 g.......k 89 + + Itr_sc000077.1_g00020.1 117 SpsisaplD 125 111212221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-34	38	126	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSTSAEANGA IIDPKQRQQQ QQQPPPSNGA LVVKKPPAKD RHSKVDGRGR RIRMPIVCAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTIPA SFSTVSVSVR NSSSTTSPSI 120 SAPLDQKPSH SLISSAPFIL GKRLRSEEDG LDGGGNKDDV AGTATVVGPT AGFWAIPPRP 180 DFGQVWSFAA APHEMVVPTP ALNSHPSRFL QQQMGEASAA RVGNYLPIAQ GHLNLLASLS 240 GPPPPSSGRR DDDGR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187993.1	1e-146	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	2e-93	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV4	1e-130	G3BGV4_SOLLC; TCP transcription factor 14
STRING	Solyc04g009180.1.1	1e-130	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-82	TCP family protein