PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000078.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 241aa    MW: 27997.5 Da    PI: 8.8063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000078.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.8e-191764148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd llv++v+ +G g+W+++ar  g++R +k+c++rw +yl
  Itr_sc000078.1_g00016.1 17 KGPWTAEEDRLLVEYVRFHGEGRWNSVARFAGLRRNGKSCRLRWVNYL 64
                             79********************************************97 PP
2Myb_DNA-binding51.32.7e-1670114147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg  T+ E+  +v++++++G++ W+tIar ++ gRt++++k++w+++
  Itr_sc000078.1_g00016.1  70 RGQITPHEERVIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                              7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0991264IPR017930Myb domain
SuperFamilySSF466891.42E-3015111IPR009057Homeodomain-like
SMARTSM007173.8E-161666IPR001005SANT/Myb domain
PfamPF002496.3E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231871IPR009057Homeodomain-like
CDDcd001671.63E-121964No hitNo description
PROSITE profilePS5129424.42365119IPR017930Myb domain
SMARTSM007174.9E-1469117IPR001005SANT/Myb domain
PfamPF002493.0E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2472118IPR009057Homeodomain-like
CDDcd001671.80E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MMGTEQMGWG IMGGWRKGPW TAEEDRLLVE YVRFHGEGRW NSVARFAGLR RNGKSCRLRW  60
VNYLRPDLKR GQITPHEERV IVELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAA  120
ANSSDHPKAR ILRQQQQQQQ QHKKKQEESN HQMDMRNMMS SFDEIDENSL SVPQPQAPTD  180
LLSDQEQGFL YSMINGYASV PEPSSTEDMI MCDGLWNLDD IHGSFSANKA CFLQPVAAPF  240
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180767.11e-148PREDICTED: transcription factor WER-like
TrEMBLA0A498I8B21e-100A0A498I8B2_MALDO; Uncharacterized protein
STRINGXP_008366333.11e-101(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-78myb domain protein 305