PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000078.1_g00028.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 29768 Da    PI: 9.5007
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000078.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.4e-31959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s
  Itr_sc000078.1_g00028.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59
                             79***********************************************96 PP
2K-box80.83.2e-2781159886
                    K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                              ++++++++s +qe+ kLk+ +e Lq++qRhllGedL +L +k+L+qLe+q+++slk+iRs++++++l+q++el +k  +
  Itr_sc000078.1_g00028.1  81 NQTSKDSQSNYQEYLKLKAGVEVLQQSQRHLLGEDLVQLGIKDLEQLENQVDTSLKSIRSTRTKHMLDQLSELHQKVGM 159
                              3577889*******************************************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.543161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-42160IPR002100Transcription factor, MADS-box
CDDcd002651.72E-45278No hitNo description
SuperFamilySSF554553.01E-34285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014865.5E-2283160IPR002487Transcription factor, K-box
PROSITE profilePS5129713.84987200IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCSS  60
SSMSKTLERY HRCSYGALEA NQTSKDSQSN YQEYLKLKAG VEVLQQSQRH LLGEDLVQLG  120
IKDLEQLENQ VDTSLKSIRS TRTKHMLDQL SELHQKVGML GFLRLGIQHF ENNIMNIKVE  180
QNLLEVNKAL RIKLGESNAA FLTPWEPQGQ NMQYGQHSSS QPIQPQQCHN TVQIGYNPTS  240
MQANNNAGTS TMNGPGVLPG WML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20170169MEF2C
5f28_B3e-20170169MEF2C
5f28_C3e-20170169MEF2C
5f28_D3e-20170169MEF2C
6byy_A4e-20170169MEF2 CHIMERA
6byy_B4e-20170169MEF2 CHIMERA
6byy_C4e-20170169MEF2 CHIMERA
6byy_D4e-20170169MEF2 CHIMERA
6bz1_A4e-20170169MEF2 CHIMERA
6bz1_B4e-20170169MEF2 CHIMERA
6bz1_C4e-20170169MEF2 CHIMERA
6bz1_D4e-20170169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180616.11e-159PREDICTED: MADS-box protein CMB1-like
RefseqXP_019180617.11e-159PREDICTED: MADS-box protein CMB1-like
RefseqXP_019180618.11e-159PREDICTED: MADS-box protein CMB1-like
SwissprotK4BND81e-103MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A328D3581e-113A0A328D358_9ASTE; Uncharacterized protein
TrEMBLA0A484LKQ91e-113A0A484LKQ9_9ASTE; Uncharacterized protein
TrEMBLA0A484M9X41e-113A0A484M9X4_9ASTE; Uncharacterized protein
STRINGXP_009788435.11e-108(Nicotiana sylvestris)
STRINGPGSC0003DMT4000728911e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]