PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000078.1_g00029.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 299aa    MW: 33893.7 Da    PI: 8.1974
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000078.1_g00029.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25e-29959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtfskRr g+ KKA+E+SvLCdaev +i+fs++gkl+eys+
  Itr_sc000078.1_g00029.1  9 KRIENKINRQVTFSKRRGGLVKKAHEISVLCDAEVGLIVFSHKGKLFEYST 59
                             79***********************************************96 PP
2K-box13.23.8e-0683110936
                    K-box   9 leeakaeslqqelakLkkeienLqreqR 36 
                              ++++ +e+++ e+akLk+++e L+r+++
  Itr_sc000078.1_g00029.1  83 NNSESSENWTLEYAKLKAKVELLKRNHK 110
                              567779*******************986 PP
3K-box73.18.1e-2515522033100
                    K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                              +e  h++GedL++Lslk+Lq+LeqqL++slk iRs++n+ll+e+++elqkke++++een++L kk++e
  Itr_sc000078.1_g00029.1 155 EE--HYMGEDLDTLSLKDLQNLEQQLDSSLKLIRSRRNQLLYESLSELQKKERAIREENNMLAKKIKE 220
                              44..9************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.001161IPR002100Transcription factor, MADS-box
CDDcd002651.53E-41276No hitNo description
SuperFamilySSF554554.06E-34292IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.998134224IPR002487Transcription factor, K-box
PfamPF014862.0E-19156218IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVGLIVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERRL LANNSESSEN WTLEYAKLKA KVELLKRNHK WEDQCLMPTM  120
TLGALTLGVT PTLQLSGLDP ILLLGPKSRH DKIVEEHYMG EDLDTLSLKD LQNLEQQLDS  180
SLKLIRSRRN QLLYESLSEL QKKERAIREE NNMLAKKIKE KEKTAAAAAA AQPQAPWEQQ  240
NQVPGSSSFL FQQPSLPGLN MGGSYQGEAA AEEARRNNND LDLNLDSLYP PCHLGCFAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-20174173MEF2 CHIMERA
6byy_B1e-20174173MEF2 CHIMERA
6byy_C1e-20174173MEF2 CHIMERA
6byy_D1e-20174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3028480.0AB302848.1 Ipomoea nil PnAP1 mRNA for transcription factor PnAP1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180614.11e-149PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-114AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLB5MEM41e-148B5MEM4_IPONI; Transcription factor PnAP1
STRINGXP_009778843.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]