PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000079.1_g00045.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 444aa MW: 48186.6 Da PI: 6.4063

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000079.1_g00045.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	250	297	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Itr_sc000079.1_g00045.1 250 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 297 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.08E-11	244	301	No hit	No description
SuperFamily	SSF47459	9.68E-17	244	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	246	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.669	246	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	250	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-10	252	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MQKDHFFNGG GGAPPPPPLQ FQYAQFVSPF AGDMSPAYAE NNDNNVNNYN TDTSRCFTPP 60 APLAGDVERT AAKLFCLGSR SFNSRTGQFG GKNGDLPCRS NVVQCIGNAK LPRISSTPSL 120 KQAGSPVQNK NSGPNLPELG PGNNSHQQFS VPDQTPTESN PRKRKSISRR PAEEDDYDAK 180 GTETEDQSPA KRSKSAEEAG NDNNGVKTEE LNNTANNNAN AGDGKPNQKP PEPPKDYIHV 240 RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCSKVT GKALMLDEII NYVQSLQRQV 300 EFLSMKLATV NPRLDVNIDS LGPKDICQST VSLPHSVYPL GSSAPGFRGQ EQYPPEQIPN 360 LHTNLVNGAV SQCPMYPLGT SPSPSLGMQF PPVDGFGENL NQFPPVFEDD LQSIVHMGFN 420 RISPLNLPSS NENDVSITVL PPSI

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MQKDHFFNGG GGAPPPPPLQ FQYAQFVSPF AGDMSPAYAE NNDNNVNNYN TDTSRCFTPP  60
APLAGDVERT AAKLFCLGSR SFNSRTGQFG GKNGDLPCRS NVVQCIGNAK LPRISSTPSL  120
KQAGSPVQNK NSGPNLPELG PGNNSHQQFS VPDQTPTESN PRKRKSISRR PAEEDDYDAK  180
GTETEDQSPA KRSKSAEEAG NDNNGVKTEE LNNTANNNAN AGDGKPNQKP PEPPKDYIHV  240
RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCSKVT GKALMLDEII NYVQSLQRQV  300
EFLSMKLATV NPRLDVNIDS LGPKDICQST VSLPHSVYPL GSSAPGFRGQ EQYPPEQIPN  360
LHTNLVNGAV SQCPMYPLGT SPSPSLGMQF PPVDGFGENL NQFPPVFEDD LQSIVHMGFN  420
RISPLNLPSS NENDVSITVL PPSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178237.1	0.0	PREDICTED: transcription factor bHLH62-like
TrEMBL	A0A2I4GJU5	1e-113	A0A2I4GJU5_JUGRE; transcription factor bHLH62
TrEMBL	B9T7X6	1e-113	B9T7X6_RICCO; Transcription factor, putative
STRING	XP_002534345.1	1e-114	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-80	bHLH family protein