PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000079.1_g00071.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 221aa MW: 25687.2 Da PI: 8.359

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000079.1_g00071.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.5	2e-27	56	144	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY++YA+++GF +r+++ ++s+ +++i +r++ C+k+g+ + k++ +r++r++tr gCka++ vk +k+gkw+vt++++eH+ Itr_sc000079.1_g00071.1 56 EFYDNYARRAGFVMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKDQFGPARKPRTSTREGCKAMMLVKVDKSGKWVVTRFVKEHT 141 6***************************************999999************************************ PP FAR1 87 Hel 89 H+l Itr_sc000079.1_g00071.1 142 HPL 144 *99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-25	56	145	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MIKECEIHQC YVDIEVEAAI GDSSASAERR LDSGEESRVQ EPVVGMEFES EDAAKEFYDN 60 YARRAGFVMR IDQCRRSEVD KRILSRRLSC NKQGYYVKMK DQFGPARKPR TSTREGCKAM 120 MLVKVDKSGK WVVTRFVKEH THPLIVSGRP SRNAMDHKDR RIHELTMELD RQDRLCELYR 180 DQLNTLLKYI EEQIEVVSGK VQVVVSNVNQ VEKEARKPTN Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178403.1	1e-152	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_019178404.1	1e-152	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A1S3YTJ7	1e-101	A0A1S3YTJ7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009779434.1	1e-101	(Nicotiana sylvestris)
STRING	XP_009626414.1	1e-101	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-67	FAR1 family protein