PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000082.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family S1Fa-like
Protein Properties Length: 69aa    MW: 7669.34 Da    PI: 11.0595
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000082.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA129.21.1e-40369470
                     S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                             + ve+kG+nPGlivll+vgglll f+vgn++ly yaqk+lPP+kkkP+skkk+k+e+l+qGv++PGe
  Itr_sc000082.1_g00032.1  3 QDVEVKGFNPGLIVLLLVGGLLLAFFVGNFLLYRYAQKALPPKKKKPISKKKMKKERLRQGVSAPGE 69
                             579***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.6E-37569IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MAQDVEVKGF NPGLIVLLLV GGLLLAFFVG NFLLYRYAQK ALPPKKKKPI SKKKMKKERL  60
RQGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159410.13e-41PREDICTED: DNA-binding protein S1FA-like isoform X1
SwissprotP425532e-13S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLW9SCA38e-23W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.11e-23(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249