PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000082.1_g00045.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 462aa    MW: 50696.3 Da    PI: 5.9847
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000082.1_g00045.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.2e-17139188155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Itr_sc000082.1_g00045.1 139 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 188
                              78*******************......55************************998 PP
2AP244.63.6e-14231281155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ kl+g
  Itr_sc000082.1_g00045.1 231 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKLNG 281
                              89********.7******5553..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-16139198IPR016177DNA-binding domain
PfamPF008472.1E-9139188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-17140197IPR001471AP2/ERF domain
CDDcd000181.23E-11140198No hitNo description
PROSITE profilePS5103217.82140196IPR001471AP2/ERF domain
SMARTSM003803.7E-32140202IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-17231291IPR016177DNA-binding domain
CDDcd000183.71E-25231291No hitNo description
PfamPF008471.8E-9231281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-16232290IPR001471AP2/ERF domain
PROSITE profilePS5103216.107232289IPR001471AP2/ERF domain
SMARTSM003802.4E-31232295IPR001471AP2/ERF domain
PRINTSPR003678.9E-7233244IPR001471AP2/ERF domain
PRINTSPR003678.9E-7271291IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MFDLNLSAVE AIGDRGVVAA SEKVLELSGT SNSSVVNAET SSTAGDDEYS CSDGYAFEIL  60
RREEDGKEYG ESENRGGFET KELFPLSGGE AVLFNQQQQQ QWLDLSANYG IVADPRIMIL  120
PPQRPQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD  180
RAAIKFRGLD ADINFNVSDY EEDLQQMKNF TKEEFVHILR RQSTGFSRGS SKYRGVTLHK  240
CGRWEARMGQ FLGKKYIYLG LFDSEIEAAR AYDKAAIKLN GREAVTNFEL SAYEQELTSE  300
VDTGGGSQDL DLHLGIAPTS FVDGMGTLQL QSGLASPKQW GVGASASNTV ESELLPHGYE  360
LLSEHPPICN GVNTQFFPIY KGTAIGKSME IDSSPNWAQA YGGTPPATLF STAASSGFAN  420
TTFTSSSAAA RLPHFSGGML PYHHSSPPIQ TMNSTAHFCC RS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0722990.0AB072299.1 Ipomoea nil InAP2B gene for APETALA2B, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159117.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AMA91e-102AP22_ORYSI; APETALA2-like protein 2
TrEMBLQ6BEL50.0Q6BEL5_IPONI; APETALA2B
STRINGXP_009606014.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-103related to AP2.7