PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000083.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 339aa MW: 37986.1 Da PI: 6.0646

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000083.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.7e-10	59	108	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L Itr_sc000083.1_g00016.1 59 RKVQKADREKLRRDRLNEQFTELGNTLDPD----RPKNDKASILTDTIQMVKDL 108 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.3E-13	58	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.408	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-13	59	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-8	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.09E-7	59	113	No hit	No description
SMART	SM00353	2.6E-7	64	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDRSNHDAGA FYQSINAPTT SLPEFSQQPL PDMSLHRLPP DCSAKDRPEA ELRDSIAARK 60 VQKADREKLR RDRLNEQFTE LGNTLDPDRP KNDKASILTD TIQMVKDLSD QVSRLKSEYT 120 ALTEECRELT QEKNDLREEK ASIKSDIESL NAQYQQRLRT MYPWAGMDHP LVMHPPSYPY 180 PVPVPIPTGP IPMHPSMQAY PFFGNQNPAV IPNPCSTFVP YMTPTTIIEQ PSTHVSPAVQ 240 PSSRTHGLSK QDSRHKPDQE ESRIERSEDS NEVATDLELK TPGSTSEQEL SSGQRRAKKR 300 PVENNSLTDG SSSSRCSSSH SVQAFSSNSV VGDSKKDEK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165383.1	0.0	PREDICTED: transcription factor bHLH121
Swissprot	Q9LT23	3e-92	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A3Q7EUG3	1e-154	A0A3Q7EUG3_SOLLC; Uncharacterized protein
STRING	Solyc01g111130.2.1	1e-154	(Solanum lycopersicum)
STRING	XP_009783164.1	1e-154	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	5e-86	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]