PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000083.1_g00043.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 230aa MW: 25274.1 Da PI: 8.3255

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000083.1_g00043.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	174.1	6.9e-54	38	170	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 +++CqdCGnq+kkdCa++RCRtCCksrgf+C th+kstWvp+ krr r+++l++++s+ + +a++kr r+l ++ Itr_sc000083.1_g00043.1 38 NSRCQDCGNQSKKDCAYMRCRTCCKSRGFECPTHIKSTWVPVCKRRPRHHHLSTTASQ---HPLTANPKRYRQL--------QNPP 112 679*******************************************8887775443...3456777787775........2222 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e ++P+evs +avfrcvrvs+vd+ge+++aYqt+v+i+GhvfkGiLydqG+e+ Itr_sc000083.1_g00043.1 113 ------FFGGEEGNFPAEVSFPAVFRCVRVSAVDNGEDQYAYQTSVNIAGHVFKGILYDQGPES 170 ......22334567**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-56	39	169	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.5E-25	41	82	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.4E-28	121	168	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTMQPAGGPV LREEKVESRM MMTMRDDDEQ EGGSSGSNSR CQDCGNQSKK DCAYMRCRTC 60 CKSRGFECPT HIKSTWVPVC KRRPRHHHLS TTASQHPLTA NPKRYRQLQN PPFFGGEEGN 120 FPAEVSFPAV FRCVRVSAVD NGEDQYAYQT SVNIAGHVFK GILYDQGPES RYNAAGESSS 180 GGGGFQHQPS NLLSTAATAV TSNASPPSYP SPFSTTNFMP GTHFFPYPKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165178.1	1e-111	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	1e-57	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1J6I112	3e-75	A0A1J6I112_NICAT; Protein shi related sequence 1
STRING	XP_009602229.1	3e-74	(Nicotiana tomentosiformis)
STRING	XP_009607768.1	2e-74	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-53	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]