PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000083.1_g00061.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 363aa MW: 39918.4 Da PI: 8.4521

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000083.1_g00061.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.6e-10	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Itr_sc000083.1_g00061.1 165 SHSLAERVRREKISERMRYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 212 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.40E-9	159	216	No hit	No description
SuperFamily	SSF47459	6.8E-17	159	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-17	161	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.516	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-7	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MVGSGGYGGG GETCDQIMSG SMIFPPVQAH QQFQGLMNYD DQNLIQILEN GWIERNSDII 60 GMNYALSSCS PAAAAVAAAE AISAGKKKDA FPAGRESFKR RKTDKVVAEE ERKDKKLKGC 120 QEDVRTEQTD NNSKKEHSTD TSKVTQDKKP DYIHVRARRG QATDSHSLAE RVRREKISER 180 MRYLQDLVPG CNKITGKAGM LDEIINYVQS LQKQVEFLSM KLAAVNPRLD FNIDSLFTKE 240 MFQSSPSNFP PVGIISDVST PFNLLQLVAS SGLEMGISPS DMALRRAINS PVSVPKTLLN 300 SSGINVTGTD MSNLGWRVTK PVCHGGSTRK ISILHFTAIY GFVEGSNPRM EILESVLSEV 360 TKY

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MVGSGGYGGG GETCDQIMSG SMIFPPVQAH QQFQGLMNYD DQNLIQILEN GWIERNSDII  60
GMNYALSSCS PAAAAVAAAE AISAGKKKDA FPAGRESFKR RKTDKVVAEE ERKDKKLKGC  120
QEDVRTEQTD NNSKKEHSTD TSKVTQDKKP DYIHVRARRG QATDSHSLAE RVRREKISER  180
MRYLQDLVPG CNKITGKAGM LDEIINYVQS LQKQVEFLSM KLAAVNPRLD FNIDSLFTKE  240
MFQSSPSNFP PVGIISDVST PFNLLQLVAS SGLEMGISPS DMALRRAINS PVSVPKTLLN  300
SSGINVTGTD MSNLGWRVTK PVCHGGSTRK ISILHFTAIY GFVEGSNPRM EILESVLSEV  360
TKY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	101	KKKDAFPAGRESFKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165360.1	1e-176	PREDICTED: transcription factor bHLH63-like isoform X3
TrEMBL	A0A2G3BVW2	7e-98	A0A2G3BVW2_CAPCH; Uncharacterized protein
STRING	VIT_03s0038g04760.t01	9e-98	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6538	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-56	cryptochrome-interacting basic-helix-loop-helix 1