PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000083.1_g00062.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 89aa    MW: 10213.3 Da    PI: 9.3653
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000083.1_g00062.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-081359245
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                             g+WT+e  + +  a + + ++   +W+ +a+ +g ++t+++ + ++q
  Itr_sc000083.1_g00062.1 13 GSWTAEQNKAFEMALAVYDKDtpdRWSNVAKAVGGHKTAEEMRRHYQ 59
                             79********************************99**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.2E-71164IPR001005SANT/Myb domain
PROSITE profilePS500906.5861362IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-41363IPR009057Homeodomain-like
SuperFamilySSF466893.28E-121370IPR009057Homeodomain-like
PfamPF002498.6E-61359IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASSQSDYYH GAGSWTAEQN KAFEMALAVY DKDTPDRWSN VAKAVGGHKT AEEMRRHYQI  60
LLRDVKSIES GRVPFPAYWT TSNRYQKQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-29181176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479262.11e-35PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB86e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S4AR873e-34A0A1S4AR87_TOBAC; protein RADIALIS-like 1
STRINGXP_009618694.17e-35(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-31RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]