PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000085.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 407aa    MW: 44029.6 Da    PI: 8.5999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000085.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.7e-104975127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ++ + C ++ rtG C yG++C+F+H++
  Itr_sc000085.1_g00006.1 49 PGVPDCAYYIRTGLCGYGGKCRFNHPR 75
                             5789*********************96 PP
2zf-CCCH38.61.7e-1294120127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++ C++++rtG Ck+G++CkF+H++
  Itr_sc000085.1_g00006.1  94 PGEPTCQYYLRTGACKFGASCKFHHPR 120
                              57899********************96 PP
3zf-CCCH30.37e-10141166227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+++++tG+Ck+  +Ck++H++
  Itr_sc000085.1_g00006.1 141 DEKECSYYLKTGQCKFALTCKYHHPQ 166
                              6789********************97 PP
4zf-CCCH37.24.8e-12296322127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+++++tG Ck+G++C+++H+p
  Itr_sc000085.1_g00006.1 296 PGQPECQHYMKTGNCKFGSSCRYHHPP 322
                              5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-44875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1224876IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-75075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-55377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-45475IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.51693121IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-499120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5140167IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-4141166IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-7141166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361295323IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7295322IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5299322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4301320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEMYGRSTIR NGSQPDTSAE WAPVGPETDL EESMQRLGLW GRERYPERPG VPDCAYYIRT  60
GLCGYGGKCR FNHPRDRCSV GAVQLGVGVH PERPGEPTCQ YYLRTGACKF GASCKFHHPR  120
NAGGSLSNVS LNIYGYPLRP DEKECSYYLK TGQCKFALTC KYHHPQPAGM SGSAAARPFY  180
PTVQSLPGPS TEQYSGNSAN FRVTRPPLLP GSYLSSAYGP VLLHPGMVPV PNWSYSGPVS  240
PSLSPGAQPS NGLASVYGIS QMASSSTAFP GPYSPLLAST GPSSSAQNEK CFPERPGQPE  300
CQHYMKTGNC KFGSSCRYHH PPGWNSSNIN IASSPLGLPL RPWRVQYSPS ATYSVTNVPA  360
APGSSFLALV PISLPKLRLD LFVDLFRSLV IITNDSSSSD GIQVRED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168489.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
RefseqXP_019168490.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-138C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A328DD000.0A0A328DD00_9ASTE; Uncharacterized protein
STRINGXP_009626457.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-140C3H family protein