PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000085.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 176aa    MW: 19937.2 Da    PI: 5.1373
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000085.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1651e-5122118197
                    NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                              +reqdr+lPianv+rimk++lPanakisk+aket+qecvsefi+fvt+eas+kc+rekrkt+ngdd++wal++lGf+dy+ pl++y
  Itr_sc000085.1_g00011.1  22 MREQDRLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFIGFVTGEASEKCRREKRKTLNGDDVCWALGSLGFDDYAPPLRTY 107
                              59************************************************************************************ PP

                    NF-YB  87 lkkyrelegek 97 
                              l++yr l+ e+
  Itr_sc000085.1_g00011.1 108 LHRYRRLQVER 118
                              *****988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-5020141IPR009072Histone-fold
SuperFamilySSF471133.06E-3825146IPR009072Histone-fold
PfamPF008083.3E-262892IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.3E-155674No hitNo description
PRINTSPR006158.3E-157593No hitNo description
PRINTSPR006158.3E-1594112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDDNREGQNY SFSPGDDDGV LMREQDRLLP IANVGRIMKQ ILPANAKISK EAKETMQECV  60
SEFIGFVTGE ASEKCRREKR KTLNGDDVCW ALGSLGFDDY APPLRTYLHR YRRLQVERER  120
AEELKAAGNN GEMKALAEEP AADDDNYLKG EPAIIRYSSS ATTSVCHNSF QFHQFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-4322112696NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162118.11e-110PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822481e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLG7JKC34e-59G7JKC3_MEDTR; Nuclear transcription factor Y protein
STRINGSolyc06g009010.1.13e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]