PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000088.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 219aa    MW: 24958.8 Da    PI: 6.3956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000088.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd++l+++++++G g+W+ I++  g+ R++k+c++rw +yl
  Itr_sc000088.1_g00027.1 14 KGPWSKEEDQILINYINKYGHGNWRQIPKNAGLVRCGKSCRLRWMNYL 61
                             79******************************99************97 PP
2Myb_DNA-binding46.11.1e-1467110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg +T eE+ + v+++k +G++ W++Ia++++ gRt++++k+ w++
  Itr_sc000088.1_g00027.1  67 RGHFTHEEESIVVKLHKTFGNR-WASIAARLP-GRTDNEIKNIWHT 110
                              899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.424965IPR017930Myb domain
SuperFamilySSF466893.95E-3112108IPR009057Homeodomain-like
SMARTSM007176.0E-171363IPR001005SANT/Myb domain
PfamPF002494.1E-171461IPR001005SANT/Myb domain
CDDcd001678.27E-141661No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.47366116IPR017930Myb domain
SMARTSM007175.4E-1366114IPR001005SANT/Myb domain
PfamPF002494.4E-1367110IPR001005SANT/Myb domain
CDDcd001679.16E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGRAPCCDKT AVKKGPWSKE EDQILINYIN KYGHGNWRQI PKNAGLVRCG KSCRLRWMNY  60
LRPGIKRGHF THEEESIVVK LHKTFGNRWA SIAARLPGRT DNEIKNIWHT RLKKRLHDFD  120
NQVAGDTLNN DGASNFAAAE DNDPSGGLAG LLTQSDFPLG DDDQFWPQIN DKSGFEFNGA  180
DFNPTMDNDD VGGVDPGRLQ FWQDHLLTWT DDEFLDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162251.11e-113PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX82e-63MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A1R3K7M81e-64A0A1R3K7M8_COCAP; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-66myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]