PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000092.1_g00018.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 514aa MW: 56897.3 Da PI: 5.6946

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000092.1_g00018.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.3e-32	312	366	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F+eav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYR+ Itr_sc000092.1_g00018.1 312 KPRMRWTPELHECFMEAVKKLDGAEKATPKAVLKLMNVEGLTIYHVKSHLQKYRV 366 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.227	309	369	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	310	366	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-30	311	367	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-25	312	366	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	314	365	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-21	402	449	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MGSVLKLEGW FVSESCRRGE FSPSPRYDLA IGSFWVIKDV ALYVAVDISQ LMCLCCWVVN 60 YMFLPGKHPE LGDEVSESYC TTESDIHNVS SGELGQQLLA DDCSSGSAPH NLSDFLHKCT 120 EQSPIVSPTP GQCSSFSSAS HVQQPQNQFS RSSMFCTSLH LSSSSSLETT LRLGSLPFLP 180 DPSPHRLPKN FTIQSSDSPL HVQSDEGASE ASLKILQNIL LDESDGSVNH GHCEINDLQL 240 TEQMELQLLS DELDIAIGGD VENPRIDEIY EEPQALIQQS RELTPSQNFV SCTLPTDKLS 300 VQPSSGPAAL HKPRMRWTPE LHECFMEAVK KLDGAEKATP KAVLKLMNVE GLTIYHVKSH 360 LQKYRVAKYM PERTEEKKTS SSEDKKATVI GKGSEGKKKG NIQVMEALRM QMEVQKQLHE 420 QLEVQRALQL RIEEHARYLQ KILEEQQKAG CRVPAPLQTG SCADSEPRLA SSPMSVSPSS 480 DVASTKLEAD DGGGSLNMKR HKKDRVQPTQ NHLL

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MGSVLKLEGW FVSESCRRGE FSPSPRYDLA IGSFWVIKDV ALYVAVDISQ LMCLCCWVVN  60
YMFLPGKHPE LGDEVSESYC TTESDIHNVS SGELGQQLLA DDCSSGSAPH NLSDFLHKCT  120
EQSPIVSPTP GQCSSFSSAS HVQQPQNQFS RSSMFCTSLH LSSSSSLETT LRLGSLPFLP  180
DPSPHRLPKN FTIQSSDSPL HVQSDEGASE ASLKILQNIL LDESDGSVNH GHCEINDLQL  240
TEQMELQLLS DELDIAIGGD VENPRIDEIY EEPQALIQQS RELTPSQNFV SCTLPTDKLS  300
VQPSSGPAAL HKPRMRWTPE LHECFMEAVK KLDGAEKATP KAVLKLMNVE GLTIYHVKSH  360
LQKYRVAKYM PERTEEKKTS SSEDKKATVI GKGSEGKKKG NIQVMEALRM QMEVQKQLHE  420
QLEVQRALQL RIEEHARYLQ KILEEQQKAG CRVPAPLQTG SCADSEPRLA SSPMSVSPSS  480
DVASTKLEAD DGGGSLNMKR HKKDRVQPTQ NHLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	312	369	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	312	369	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	312	369	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	312	369	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	312	369	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	312	369	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	312	369	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	312	369	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197003.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Swissprot	Q949U2	1e-101	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A484KC78	1e-174	A0A484KC78_9ASTE; Uncharacterized protein
STRING	VIT_09s0054g01620.t01	1e-121	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21520	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	5e-81	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]