PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000093.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 324aa    MW: 34298.2 Da    PI: 5.7994
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000093.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.36.8e-16236271134
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ kg
  Itr_sc000093.1_g00014.1 236 CTHCGISSkaTPMMRRGPAGPRSLCNACGLKWANKG 271
                              *****9999***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.227100135IPR010399Tify domain
SMARTSM009792.5E-10100135IPR010399Tify domain
PfamPF062001.9E-12103134IPR010399Tify domain
PfamPF062036.8E-16167209IPR010402CCT domain
PROSITE profilePS5101713.027167209IPR010402CCT domain
SMARTSM004013.4E-10230283IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.827230287IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-11231281No hitNo description
CDDcd002022.21E-13235278No hitNo description
Gene3DG3DSA:3.30.50.105.4E-15235277IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440236263IPR000679Zinc finger, GATA-type
PfamPF003209.6E-14236271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAEAISRATM SMYGAEPEHH APQIDDGEEE DDDGVSATDV GGGGGEDSID GTSHHIQFEP  60
QSHALVLHRS MDAAMNGAEG VSPHGVYAPG GSDVVPAPVD GGAADQLTLS FQGEVYVFDA  120
VSPEKVQAVL LLLGGYEVPS GIPAAAVAPQ SHRGMGEYPG RFSQPQRIAS LNRFREKRKE  180
RCFDKKIRYT VRKEVALRMQ RKKGQFTSSK WVSDEAGSSS ADRNSSSGQE EQEIFCTHCG  240
ISSKATPMMR RGPAGPRSLC NACGLKWANK GILRDLSKVP TTGVQDHNVK AGGQLNGEAI  300
GPDALTAANV IMTNGGNSAP IPEQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196559.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL72e-80GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4B0D61e-124A0A1S4B0D6_TOBAC; GATA transcription factor 24-like
TrEMBLA0A1U7X8551e-124A0A1U7X855_NICSY; GATA transcription factor 24-like
STRINGXP_009609389.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-82ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]