PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000094.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 418aa    MW: 45327.5 Da    PI: 4.7429
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000094.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-06443538
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                             +C+ ++e++ + +C+++  +lC +C  + H+       H 
  Itr_sc000094.1_g00016.1  4 MCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsrrHP 43
                             6*****************************5556666665 PP
2zf-B_box18.63.8e-064687439
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              +C++++ +++   C + ++ lC++C  ++H +      H++
  Itr_sc000094.1_g00016.1 46 LVCERCNAQPAFVRCIEERVSLCQSCDWAGHVSsstgstHKR 87
                             58*****************************66677788876 PP
3CCT62.51.3e-21361404144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              R  a+lRYkeK+ktR FeK++rY+sRKa+A+ R RvKGrFvk+ 
  Itr_sc000094.1_g00016.1 361 RSDAVLRYKEKKKTRTFEKHVRYASRKARADVRRRVKGRFVKAG 404
                              889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.357147IPR000315B-box-type zinc finger
CDDcd000211.39E-7447No hitNo description
SMARTSM003361.9E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7314390IPR000315B-box-type zinc finger
CDDcd000211.93E-44788No hitNo description
SMARTSM003361.94890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.852361403IPR010402CCT domain
PfamPF062033.8E-16361403IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGYMCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSR RHPRTLVCER CNAQPAFVRC  60
IEERVSLCQS CDWAGHVSSS TGSTHKRQAV SCYSGCPSAA ELSSMWSFLL DFPSVGDSTC  120
EQGMGSMSIT ENCPRDSQGP EGKNVAQDVS AVDDASAMKA ENESNIWMAP SVLTVDNKLQ  180
SVELPTGATI PTNSTSPKVC YSGAKGPSFY EDDPFNMDFN VDEVDISMEN YEELFGMSLN  240
EGIDDFFGTK DMPAADSSCQ GANAVEVVVI LNSVCPGASL GQVNAMQPAC SNAASADSMM  300
SCKTEPNFCF ARQQSSLSFS NITGESSGGD YQDCGVSSML LMGEPPWGPS GPENSFPSSS  360
RSDAVLRYKE KKKTRTFEKH VRYASRKARA DVRRRVKGRF VKAGDAYDYD PLSPTRSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194500.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_019194501.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_019194502.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_019194503.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9LUA91e-132COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1S3Z9K50.0A0A1S3Z9K5_TOBAC; zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A1U7VPN60.0A0A1U7VPN6_NICSY; zinc finger protein CONSTANS-LIKE 9-like
STRINGXP_009768363.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-120CONSTANS-like 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]