PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000098.1_g00038.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 250aa    MW: 27480.9 Da    PI: 6.9489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000098.1_g00038.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-1459105354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ L  +v+++k+L
  Itr_sc000098.1_g00038.1  59 KSHSEAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLSSVVDHVKDL 105
                              79*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.94256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1259105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1559108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.47E-1359108No hitNo description
SuperFamilySSF474591.28E-1360115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1262111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.16E-5145205No hitNo description
Gene3DG3DSA:3.30.70.2606.1E-6145206No hitNo description
CDDcd048732.16E-7151194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENSFSGEWP EKGHGGAGSA SVSFPWSFPG DYSSAAAFLS WPAQPFEEAG DDRALSASKS  60
HSEAEKRRRD RINAQLATLR KLIPKSEKMD KAALLSSVVD HVKDLKRKAT EITEALADVP  120
TDTDEVTIDD QHSSTAAAIN DDQTSNYLKA SVCCDDRPEL FAEINRALKD LRLTTVQADV  180
TSLGGRVKSV FVLQLCPPDM DAVESSNHNM MNSVKHSLKV ALCKIAIPAS TTSYRIKSKR  240
QRFFLPAHYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241KSKRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191569.11e-160PREDICTED: transcription factor bHLH51-like
TrEMBLA0A484LV918e-78A0A484LV91_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000712935e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-49bHLH family protein