PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000101.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 409aa    MW: 44896.6 Da    PI: 4.5485
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000101.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.79.7e-084690442
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                              +C+ ++++++   C + ++ lC++C  e+H +      Ht++p+
  Itr_sc000101.1_g00021.1 46 LVCESCNSQPAFARCIEESVSLCQNCDWETHASsstssaHTRQPV 90
                             68*****************************87899999999885 PP
2CCT63.18.5e-22352395144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              R  a+lRYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  Itr_sc000101.1_g00021.1 352 RSDAILRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 395
                              889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.086147IPR000315B-box-type zinc finger
CDDcd000216.09E-6447No hitNo description
SMARTSM003367.2E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3854390IPR000315B-box-type zinc finger
SMARTSM003360.34890IPR000315B-box-type zinc finger
PfamPF062033.2E-16352394IPR010402CCT domain
PROSITE profilePS5101715.259352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGYLCDFCGE QQSMVYCRSD AACLCFSCDC RVHSANALSQ RHSRTLVCES CNSQPAFARC  60
IEESVSLCQN CDWETHASSS TSSAHTRQPV SHYLGCPSAA ELPSLWSFLL GIPLIGDSTC  120
ESGMSLVSLT NNDPRDSQGS EGKSAQDVST VVEGCDLRSV DKSNICTESS KATPLDKLEN  180
VELLTESTNS TSKVCYSGTK GQTLYEDEPT YDGDINMDEL DLSFENYEQL TASLDNSNKL  240
FKDEGIDDFF GTNNVPGADN DSQDANDVEG PSINWINTIQ AELSNAAFAD STTIKTESIN  300
CFARQDKYGL SFSNLSGECA GLQDSGLSSM LLMGEPPWGP SVPENLLPSS SRSDAILRYK  360
EKKKTRKFEK KVRYASRKAR ADVRRRVKGR FVKAGDAYDY DPKCQTRTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198347.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_019198348.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_019198349.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A0H3VG201e-159A0A0H3VG20_PETHY; B-box-type zinc-finger protein
STRINGPGSC0003DMT4000136241e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.42e-81CONSTANS-like 9