PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000102.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 162aa    MW: 18308.6 Da    PI: 8.1062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000102.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.87.9e-18958250
                      NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..k 50
                              pGfrFhPtdeel v+yL++kv++k++++ e+i+ vdiyk+ePw+L++  +
  Itr_sc000102.1_g00017.1  9 GPGFRFHPTDEELAVYYLRRKVRRKPFHV-EAIAVVDIYKHEPWELHAfcA 58
                             59***************************.89**************84332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-19559IPR003441NAC domain
PROSITE profilePS5100513.2058162IPR003441NAC domain
PfamPF023654.7E-91064IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDLTYLRLGP GFRFHPTDEE LAVYYLRRKV RRKPFHVEAI AVVDIYKHEP WELHAFCAVN  60
TTDQSSGQAL GGHMRRHRNS TVAAAASQLS PSSSSLEKRV PQKEENNGKC LNLDLNLLPA  120
GEDNQDHRRA RDVPENQEQQ PPPVQPTLFL STTPPPVGCK YI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175886.12e-36PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A328DHL24e-22A0A328DHL2_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.17e-21NAC domain containing protein 50