PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000103.1_g00050.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 684aa    MW: 73581.2 Da    PI: 6.6233
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000103.1_g00050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-093984351954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Itr_sc000103.1_g00050.1 398 FEHflHPYPKDSDKIMLAKQTGLTRNQVSNWFINARVR 435
                              554459******************************88 PP
2BELL117.18.5e-38261332172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              erqe+q+kkakL+++l+eV++rY+qy++q+q+vi  Fe++ag+gsak Yt+lAl++iS++FrcLkdai +qi
  Itr_sc000103.1_g00050.1 261 ERQEIQMKKAKLVNMLDEVEQRYRQYHHQMQIVITWFEQAAGIGSAKTYTALALQTISKQFRCLKDAILGQI 332
                              79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-63188330IPR006563POX domain
PfamPF075264.1E-49193328IPR006563POX domain
PROSITE profilePS5007112.147376439IPR001356Homeobox domain
CDDcd000869.84E-13379440No hitNo description
SMARTSM003892.1E-9379443IPR001356Homeobox domain
SuperFamilySSF466897.27E-17380446IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-29382446IPR009057Homeodomain-like
PfamPF059203.7E-18396435IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MATYFHGNSE IQAGGDGLQT LILMNPAGYV GFSDAPQQGQ PPPGSNFIFL NSNAPGSSIS  60
FAHAPPTQSQ QQYVGIPLAT TASAPPSTQD VHAPSHDITA LHGFLGRPQY NLYAPPIELA  120
AAREVTRAAQ QGLSLSLSSQ QPGFGNFRAE REVGSQQLVT AISPTAGDEV RVSGGSPSSA  180
SGVSNGVNGV QSVLLSSKFL KAAQELLEEV VNVGKGVKAP TESSKDAICP AKNPADSSGA  240
GDGQAGGESS GKRATELTTA ERQEIQMKKA KLVNMLDEVE QRYRQYHHQM QIVITWFEQA  300
AGIGSAKTYT ALALQTISKQ FRCLKDAILG QIRAASKSLG EEDGLGGKIE GSSRLKFVDN  360
QLRQQRALQQ LGMIQHNAWR PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KIMLAKQTGL  420
TRNQVSNWFI NARVRLWKPM VEEMYMEEIK EQEQNGSENK TGKGEPNEDS ASHQDKSPGG  480
SDNQDKSFAQ NQSTTMPGGF NLIVPSEMES ITQGSPKKPR STDMLHSPSS VPSISIDTKP  540
ADPSTAAGNE QGSMKFMNDR QNREGFTLLG NSTNFMGGFG SYPIGEIGRF STEQFPGIPP  600
PYSGNAVSLT LGLPPSENLP MSATHHAFLP APDIHMGRGV EMGEANEFGG MTTPTSAHPT  660
SVYESFNLQN RKRFAAPLLP DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15385443563Homeobox protein Meis2
3k2a_B2e-15385443563Homeobox protein Meis2
4xrs_A1e-15385442158Homeobox protein Meis1
4xrs_B1e-15385442158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187455.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_019187456.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_019187457.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_019187458.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-171BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A1J6I7N50.0A0A1J6I7N5_NICAT; Bel1-like homeodomain protein 1
STRINGXP_009787672.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-149BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]