PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000104.1_g00022.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 341aa    MW: 39107.7 Da    PI: 5.0395
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000104.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.29.7e-32821732102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              F++k+y++++++e+++++sw+++g+ +vv+d ++fa ++Lp+yF+hsn +SF  QLn YgF+k++ ++         weF+h++F+
  Itr_sc000104.1_g00022.1  82 FVRKTYDMVNNPETDSIVSWNSDGSRLVVWDVHKFAAEILPTYFRHSNPSSFFCQLNSYGFRKSDWDR---------WEFQHQWFQ 158
                              9**************************************************************99998.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +gkk  l+kikr+++
  Itr_sc000104.1_g00022.1 159 RGKKIWLNKIKRRTT 173
                              ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-3878171IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.7E-3179171IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.33E-2781171IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.9E-1482105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2782171IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-14120132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-14133145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTFLENKSTY SFAAMEAEQK GGIIILDLDN NPSEPSGNDS GATKFTLHSY SELSIGESSP  60
SSPPLSASSS SCFNKEKMEA PFVRKTYDMV NNPETDSIVS WNSDGSRLVV WDVHKFAAEI  120
LPTYFRHSNP SSFFCQLNSY GFRKSDWDRW EFQHQWFQRG KKIWLNKIKR RTTRSSRRGP  180
IPLQDQQDQQ QKHQPPHDEE TSGEKAEEEI KEMLDEQNGM KMEIKHLQEN QVILAKKLAS  240
IKQADTPDVK GRKLFLLMAQ DFLESTKGKI PVEEESPNAI QENKESNNVL ARSESHTRLE  300
KLVEEGEDIM IGIEFLLEGP ADWEDYVKKL EEKGDDLKTR P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-198217329131Heat shock factor protein 1
5d5v_B3e-198217329131Heat shock factor protein 1
5d5v_D3e-198217329131Heat shock factor protein 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162121.10.0PREDICTED: heat stress transcription factor A-7a-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-30heat shock transcription factor A2