PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000107.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 294aa    MW: 30770.2 Da    PI: 9.1069
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000107.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.4e-3967126362
                   zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              e+ lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Itr_sc000107.1_g00016.1  67 EAGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 126
                              6779*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3650124IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3269124IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.67470124IPR003851Zinc finger, Dof-type
PROSITE patternPS01361072108IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVFSSFPAVY LDHPNLHQLQ QSEHHQRGVG LENPPLQAAA GGGGGVGSIR PGSMVDRARL  60
AKIPLPEAGL KCPRCDSTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGAL RNVPVGGGCR  120
RNKRSKSGNH AAKSGSAGAG CSEKQADGGG GGGGGGGSNS ACASPTDITG NFPQLPPFMA  180
AAFQNLNHYG GSSGGLGGFP PPQMAATSGG GIGEMGFHLP AVLSGFEQPH PHTNVYPFQS  240
EGLEASSSVK MEENRQGLNN STKQFLGSLE NNQYWGWTGF SGLNNSSSST THLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177233.11e-164PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBLA0A1S3XXZ71e-101A0A1S3XXZ7_TOBAC; dof zinc finger protein DOF2.4-like
STRINGXP_009774236.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-51OBF-binding protein 3