PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000109.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 656aa    MW: 72386 Da    PI: 7.1617
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000109.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.4e-12322378155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Itr_sc000109.1_g00001.1 322 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDNEEKAARAYDLAALKYWG 378
                              78*******************87776664446666.669999**************98 PP
2AP221.55.7e-07421455138
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                              s y+GV+++++ grW A+I  +     +k  +lg+f +
  Itr_sc000109.1_g00001.1 421 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFRY 455
                              57****************988532...5*******965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-9322378IPR001471AP2/ERF domain
CDDcd000187.30E-18322385No hitNo description
SuperFamilySSF541713.66E-14322387IPR016177DNA-binding domain
PROSITE profilePS5103217.266323386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-12323387IPR001471AP2/ERF domain
SMARTSM003809.4E-21323392IPR001471AP2/ERF domain
CDDcd000181.02E-19421506No hitNo description
SuperFamilySSF541712.68E-5421455IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-4422454IPR001471AP2/ERF domain
SMARTSM003803.4E-22422510IPR001471AP2/ERF domain
PROSITE profilePS5103214.75422504IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-6479504IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MNSLSNDGNS NWLGFSLSPQ MNNMEGSHGH DLQQHNTQPC SSVSSASVPL SFSQAAPSHI  60
NYSNTTGSCY YGGESENAAF LSSLSVMPLK SDGSLCIMEA FNNRSHPQGL APKLEDFFGD  120
AAMGTHHYDR TGGGMALSLD SMYYHNQNPE NEGTHSQDFL THLQQKSTHH HHHQQQQQIE  180
AQQFQDFTLR GPEIYQQGKG QCGSLHQVPS MEDNSQMKNW DSRSYSAGGG HALEQQKMMG  240
CIGAETGAIT AMGYGDFHSL SLSMSPGSQS SCVNPTQQQH HQIPPTVADC MPMETKKRGL  300
EKVDQKQIVH RKSLDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ SRKGRQGGYD  360
NEEKAARAYD LAALKYWGPS THINFSSENY QQELEEMKNM TRQEYVAHLR RKSSGFSRGA  420
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFRYVRLIT SHYEVVKDRL SARLCFLCTQ  480
EEAAEAYDIA AIKFRGVNAV TNFDISRYDV DRIMASTNLL AGEQARRNKD AGPPANNIEE  540
VVNKNGGDQE DNAGAAAPDW RIALYQSTTA EAAAVVAAPP QSSSACFGMG ESAARMMSAH  600
LSNASSLVTS VESSRECSPD KMNTVGTGSA ATSSWISSAQ LRPHVPVFAA WTDNII
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182889.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ389141e-132ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2G3AB560.0A0A2G3AB56_CAPAN; AP2-like ethylene-responsive transcription factor PLT2
STRINGXP_009589482.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-120AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]