PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000111.1_g00051.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 507aa    MW: 55094.7 Da    PI: 9.3708
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000111.1_g00051.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.3e-34184242260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d ++ ei+Y+geHnh+k
  Itr_sc000111.1_g00051.1 184 SDGYNWRKYGQKQVKGSEYPRSYYKCTHPKCPVKKKVERSSLDDQIAEIVYKGEHNHPK 242
                              7********************************************************85 PP
2WRKY30.19.3e-10386405322
                              -SS-EEEEEEE--TT-SS-E CS
                     WRKY   3 DgynWrKYGqKevkgsefpr 22 
                              Dg++WrKYGqK+vkg+++pr
  Itr_sc000111.1_g00051.1 386 DGFRWRKYGQKVVKGNTYPR 405
                              9******************9 PP
3WRKY52.21.2e-164474832359
                              EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              sYYrCts++C+v+k ver+ +dpk +++tYeg+Hnh+
  Itr_sc000111.1_g00051.1 447 SYYRCTSPKCNVRKYVERAPDDPKSFITTYEGKHNHD 483
                              9***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30172243IPR003657WRKY domain
PROSITE profilePS5081127.324178243IPR003657WRKY domain
SMARTSM007741.2E-37183242IPR003657WRKY domain
SuperFamilySSF1182901.57E-26183243IPR003657WRKY domain
PfamPF031063.7E-26185241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-28370404IPR003657WRKY domain
PROSITE profilePS5081124.352379485IPR003657WRKY domain
SuperFamilySSF1182905.89E-8379406IPR003657WRKY domain
SMARTSM007743.9E-31384484IPR003657WRKY domain
PfamPF031068.1E-6386405IPR003657WRKY domain
SuperFamilySSF1182902.22E-13445485IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-28446485IPR003657WRKY domain
PfamPF031069.7E-12447483IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEIKEVKKIA VAKPVATRPT CSAYRPFSEL LSGAINGSST GGCSQTAVIA AIRPKTVRLR  60
SAGNQTLGGK VEMPGISARS PPANVLKSDD KPTIVYKPMA KLLSKTTFPQ NLNMRSSTSS  120
QQNEAAEETN QVKPSDIRLE AHQSLSLKSG TEKKPVENSK MALQNIEEDE RSVFQGSGVD  180
CLSSDGYNWR KYGQKQVKGS EYPRSYYKCT HPKCPVKKKV ERSSLDDQIA EIVYKGEHNH  240
PKPQLPRSNL RDGQPKGVLV SEDTCNETNN PVRSEQLTLQ NEPCGPSTEH KNTTMLSTRS  300
TYSSGPPPPC YPVTSAAAFH GAVSTPENSC TPSGIHREGL EAEGDELKGK RRQCGSQTNN  360
GATLGNGAME TQTVVGSTTD SETTGDGFRW RKYGQKVVKG NTYPRWGGFE PPIRQRPCGL  420
VAPGCTPTGV GSSLSGGDIG SLCFIWSYYR CTSPKCNVRK YVERAPDDPK SFITTYEGKH  480
NHDIPTRNPN PEASRSSTRA AATKEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-22177485877Probable WRKY transcription factor 4
2lex_A7e-22177485877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184993.10.0PREDICTED: WRKY transcription factor 44-like
TrEMBLA0A068UE221e-141A0A068UE22_COFCA; Uncharacterized protein
STRINGVIT_08s0040g03070.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.16e-73WRKY family protein