PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000113.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 269aa MW: 29391 Da PI: 5.0945

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000113.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.4	2.3e-36	23	80	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + lkcprCds +tkfCyynnys sqPryfCk+CrryWtkGGalr +PvGgg+r++k + Itr_sc000113.1_g00005.1 23 RRLKCPRCDSPDTKFCYYNNYSQSQPRYFCKTCRRYWTKGGALRTIPVGGGCRRRKIM 80 6789**************************************************9966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.1E-31	24	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.183	25	79	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	25	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MAAANKGDAQ ISGDGDKTPA VTRRLKCPRC DSPDTKFCYY NNYSQSQPRY FCKTCRRYWT 60 KGGALRTIPV GGGCRRRKIM KSSPAARYYD IGGLGYLNGV SQPLGGIKIP SYNTSAAALI 120 NQLSGALLAM PSTPPCFNLD QLSPPFSISS PLFDFKFPGT QELGRLAPPI EPVGTANQDL 180 QWNLQQKILE KQILEIPTPP SEATFESTSS RIAEATEWLF DDDDVTFPLP GNPTATNSFG 240 NGNGNASEDD WDELIQAWAT NFNEFSALP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177185.1	1e-109	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A328DF80	8e-52	A0A328DF80_9ASTE; Uncharacterized protein
STRING	XP_002532379.1	5e-49	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5242	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-31	TARGET OF MONOPTEROS 6