PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000114.1_g00032.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 260aa MW: 29527.4 Da PI: 5.1825

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000114.1_g00032.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128	7.2e-40	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 +p+GfrF Pt+eelv++yL +k++g++ +++ vi+ v+iy + Pw+Lp+ + ++++++w++F++ ++ a+g ++nr t++gy Itr_sc000114.1_g00032.1 4 MPVGFRFYPTEEELVSFYLGNKLRGERQDIDLVIPVVNIYLHRPWELPQlagvASYGDDEQWFYFMPGPENIARGGKPNRLTTEGY 89 699*************************888***********656655556889********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg v+s +++++g k+t+vfy+grap+g+kt+W ++ey++ Itr_sc000114.1_g00032.1 90 WKATGCPSLVFSINNRVIGEKRTMVFYTGRAPNGTKTEWKINEYKA 135 ******************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-45	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	45.001	4	163	IPR003441	NAC domain
Pfam	PF02365	5.2E-19	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEDMPVGFRF YPTEEELVSF YLGNKLRGER QDIDLVIPVV NIYLHRPWEL PQLAGVASYG 60 DDEQWFYFMP GPENIARGGK PNRLTTEGYW KATGCPSLVF SINNRVIGEK RTMVFYTGRA 120 PNGTKTEWKI NEYKAVHGEA SASAPLSDLE LRQEFSLCRL YKKPKCDRAF DRRPLSVTAV 180 RRRIARQPPP QPPPDSVQTT AMILPQQDNN NPPANEMTGA GNISPAPEDA VIPSNNAMGT 240 QVFWDNFTPI WDWEDCFNLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-29	4	163	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-29	4	163	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-29	4	163	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-29	4	163	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-29	4	163	20	168	NAC domain-containing protein 19
3swm_B	1e-29	4	163	20	168	NAC domain-containing protein 19
3swm_C	1e-29	4	163	20	168	NAC domain-containing protein 19
3swm_D	1e-29	4	163	20	168	NAC domain-containing protein 19
3swp_A	1e-29	4	163	20	168	NAC domain-containing protein 19
3swp_B	1e-29	4	163	20	168	NAC domain-containing protein 19
3swp_C	1e-29	4	163	20	168	NAC domain-containing protein 19
3swp_D	1e-29	4	163	20	168	NAC domain-containing protein 19
4dul_A	1e-29	4	163	17	165	NAC domain-containing protein 19
4dul_B	1e-29	4	163	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159296.1	1e-169	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-62	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A068UQS7	3e-83	A0A068UQS7_COFCA; Uncharacterized protein
STRING	XP_009620854.1	3e-83	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	4e-65	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]