PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000115.1_g00045.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 194aa MW: 22012.5 Da PI: 7.5728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000115.1_g00045.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	30	81	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C.....TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as..kapskKlsKaeiLekAveYIksL 54 + +Er+RR +++ +L +l+P+ + + + ls + L +A YIk L Itr_sc000115.1_g00045.1 30 KTVERKRRIHMKYLCGKLVSLIPPhHFypSKQESVLSQQDQLDQAATYIKAL 81 679*******************66695555555*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.045	24	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-9	29	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-9	30	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.52E-4	32	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEDLVEKGDL MDMMEEKMST GGVSEKPDRK TVERKRRIHM KYLCGKLVSL IPPHHFYPSK 60 QESVLSQQDQ LDQAATYIKA LRERVEKLEK MKKKKMSWGE EEEEEEKSAT SAAGCTLLKS 120 PVIEVRDLGS TLEVVLMSAT NKPNLMLHQL IRIVEEEGAQ VETASFSTVG DKVKVARLGM 180 ETSRVYGRLK QLIT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152554.1	3e-88	PREDICTED: uncharacterized protein LOC109149300 isoform X1
TrEMBL	A0A1S4C717	3e-55	A0A1S4C717_TOBAC; uncharacterized protein LOC107815812
STRING	XP_009618665.1	9e-54	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6083	14	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-15	bHLH family protein