PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000115.1_g00046.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 196aa    MW: 21967.5 Da    PI: 10.0265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000115.1_g00046.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-091870655
                             HHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-.STCHHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPkas..kapskK.lsKaeiLekAveYIksLq 55
                             + +Er+RR ++++   +L +l+P++    a+s+  +s  + L +Av YIk+L+
  Itr_sc000115.1_g00046.1 18 KTVERNRRIHMKNLCGKLVSLIPPQHlqPASSRElVSQQDQLDQAVTYIKQLK 70
                             679*********************66688888889****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.611269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-91781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-91779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-61869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAHATETPAS SSGKLDRKTV ERNRRIHMKN LCGKLVSLIP PQHLQPASSR ELVSQQDQLD  60
QAVTYIKQLK ERVEKLKNVK KRKLVPAGKE EEDERCSGSA PASLKAPPIL QVRDLGSSLE  120
VNFISCCTKN FILHQVIKIV EEEGGQVVSA IFSTIGDKVF YTLHAQVKVT RLGMNTLEVY  180
ERLKKLIISQ LPARQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682KNVKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152553.11e-106PREDICTED: transcription factor bHLH100-like
TrEMBLA0A1S4C7172e-58A0A1S4C717_TOBAC; uncharacterized protein LOC107815812
TrEMBLM5W8R33e-58M5W8R3_PRUPE; Uncharacterized protein
STRINGEMJ100895e-59(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.14e-25bHLH family protein