PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000116.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 343aa MW: 37446.4 Da PI: 6.9502

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000116.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.4e-14	124	170	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Itr_sc000116.1_g00003.1 124 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 170 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	121	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-11	124	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-15	125	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-15	125	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-5	134	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MQPQSSTDAY TGGAGMSSQI FPWGFNPVQQ PYNPVHLPIN SVRDHDPFVL PPAPSPYGGF 60 FGRRQSLPYA YDDAPPSEHL RLISDTLLGQ VVHPGSGGPF GLQAELQKLA AQEIMDAKAL 120 AASKSHSEAE RRRRERINNH LAKLRSLLPN TTKTDKASLL AEVIQHVKEL KRQTSVIAET 180 TPVPTETDEL TVDNVSGEVG NNKLLIRATL CCDDRSDLLP DLIKTLKGLR LKALRAEITT 240 LGGRMRNVLF ITRDGEYDGD DESFQSISSV EDALRAVMER SNGGEDQSGN CSSVANIQFV 300 VCLVVRDVKV TVSVYFVISG ILSFTAAVSS SAHRRNIPIT IRA

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MQPQSSTDAY TGGAGMSSQI FPWGFNPVQQ PYNPVHLPIN SVRDHDPFVL PPAPSPYGGF  60
FGRRQSLPYA YDDAPPSEHL RLISDTLLGQ VVHPGSGGPF GLQAELQKLA AQEIMDAKAL  120
AASKSHSEAE RRRRERINNH LAKLRSLLPN TTKTDKASLL AEVIQHVKEL KRQTSVIAET  180
TPVPTETDEL TVDNVSGEVG NNKLLIRATL CCDDRSDLLP DLIKTLKGLR LKALRAEITT  240
LGGRMRNVLF ITRDGEYDGD DESFQSISSV EDALRAVMER SNGGEDQSGN CSSVANIQFV  300
VCLVVRDVKV TVSVYFVISG ILSFTAAVSS SAHRRNIPIT IRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	134	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165062.1	0.0	PREDICTED: transcription factor bHLH30-like
Refseq	XP_019165063.1	0.0	PREDICTED: transcription factor bHLH30-like
Refseq	XP_019165064.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	5e-87	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1J6HSA5	1e-117	A0A1J6HSA5_NICAT; Transcription factor bhlh30
TrEMBL	A0A1S4C632	1e-117	A0A1S4C632_TOBAC; transcription factor bHLH30-like
STRING	XP_009614307.1	1e-118	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-82	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]