PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000120.1_g00018.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 247aa MW: 27491.3 Da PI: 7.4338

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000120.1_g00018.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.9	2.7e-06	32	76	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +E++RR++++ +++L +l+P++ ++ l + + +++YIk + Itr_sc000120.1_g00018.1 32 KYVEKNRRNQLKGLYNQLFSLVPSS----QETLPLPDQVDVTINYIKTM 76 568*********************8....45566666666666666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.28	26	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-9	28	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-8	30	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.02E-4	34	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEKAGQPSGL ARADLVQKTP ILSGRGPKLE RKYVEKNRRN QLKGLYNQLF SLVPSSQETL 60 PLPDQVDVTI NYIKTMKEKL EKMKHEREEL MMMKKKAQSR KMHSCASSSL SSHLHHHDVE 120 PHPQIHIHEM GPAMAVVFIT GLDNVATFNN AIRVVRGEEG VEVTSASFQL HGNSTLQIVG 180 EPVGKWAVSN GAAGAIASVS KKLKEMISGT TSTETESSSR LELWDYDIEN EVWGFDVVAP 240 LQHNIEQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159181.1	1e-128	PREDICTED: uncharacterized protein LOC109155924 isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-15	bHLH family protein