PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000124.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 370aa MW: 40472.3 Da PI: 6.5962

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000124.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.1	1e-09	142	190	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Itr_sc000124.1_g00013.1 142 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 190 9****************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-16	138	202	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	140	203	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-8	142	190	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-10	142	193	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.5E-10	142	196	No hit	No description
CDD	cd14703	7.98E-24	143	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MQDPANSKPM MMSQAPAFPS ALRPSHHRRA HSEVNFRLPE DLDLVSDPFD AAPAGSFEEM 60 GSEDDLFSTY MDIEKLGGAG AGPDSVAADS GGDGEKSLGR PRHRYSNSVD SSSSLLLSES 120 TIEAKKAMAP DKLAELWTID PKRAKRILAN RQSAARSKER KARYISELER KVQTLQTEAT 180 TLSAQLTLFQ RDTTGLSNEN TELKLRLQAM EQQAQLRDAL NEALKNEVER LRIATGEIAA 240 PSDAYSLGMQ HIPYNQSAFF SHQPPSGPSD SQNIQIPQFH AIQPSTSTPH HPMLASASVQ 300 ALADTVQQDP LGRFQGLDIS SSRGSHIVKS EAPSISASES SSRKRSRLLG LIPTLHVLEL 360 MRGYWQFLGA

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MQDPANSKPM MMSQAPAFPS ALRPSHHRRA HSEVNFRLPE DLDLVSDPFD AAPAGSFEEM  60
GSEDDLFSTY MDIEKLGGAG AGPDSVAADS GGDGEKSLGR PRHRYSNSVD SSSSLLLSES  120
TIEAKKAMAP DKLAELWTID PKRAKRILAN RQSAARSKER KARYISELER KVQTLQTEAT  180
TLSAQLTLFQ RDTTGLSNEN TELKLRLQAM EQQAQLRDAL NEALKNEVER LRIATGEIAA  240
PSDAYSLGMQ HIPYNQSAFF SHQPPSGPSD SQNIQIPQFH AIQPSTSTPH HPMLASASVQ  300
ALADTVQQDP LGRFQGLDIS SSRGSHIVKS EAPSISASES SSRKRSRLLG LIPTLHVLEL  360
MRGYWQFLGA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019158142.1	0.0	PREDICTED: transcription factor RF2b-like
Refseq	XP_019158143.1	0.0	PREDICTED: transcription factor RF2b-like
Refseq	XP_019158144.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-116	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A3Q7GV72	1e-174	A0A3Q7GV72_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400070968	1e-166	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-111	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]