PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000125.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 196aa    MW: 22041.4 Da    PI: 9.2802
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000125.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.14.8e-10175196122
                              ---SS-EEEEEEE--TT-SS-E CS
                     WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                              ldDgy+WrKYG+K+vk++++pr
  Itr_sc000125.1_g00006.1 175 LDDGYKWRKYGKKMVKSNTNPR 196
                              59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-9161196IPR003657WRKY domain
SuperFamilySSF1182905.62E-8168196IPR003657WRKY domain
PROSITE profilePS5081112.427170196IPR003657WRKY domain
PfamPF031061.5E-5176196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMSGSDFLQA NINPPSKDHP TLNHDSFDNL PSIIEDYHRH YYPISEVSSY ISYVNHFLND  60
ESPAPPPPNS TGHGFGPSPS LSPPSAAVVT QERSCTTTTT TGSSCSSFDG MPPTSSPHSQ  120
IIGYSNNEMR RKLKVNKEEQ TIAFRTKTEL XRRKLKVNKE EQTIAFRTKT ELPVLDDGYK  180
WRKYGKKMVK SNTNPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129155RRKLKVNKEEQTIAFRTKTELXRRKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152823.11e-80PREDICTED: probable WRKY transcription factor 51
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134941217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-11WRKY DNA-binding protein 50