PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000125.1_g00064.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 306aa MW: 33208.9 Da PI: 7.0647

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000125.1_g00064.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.4	3.5e-33	55	110	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhA+ +GghavDGCgEfmp+ ge+gt ++lkCaACgCHRnFHR+e+e Itr_sc000125.1_g00064.1 55 RYRYRECLKNHAVGIGGHAVDGCGEFMPA-GEDGTLDSLKCAACGCHRNFHRKEEEG 110 689***********************9.999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.6E-30	56	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.7E-31	57	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-22	57	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.016	58	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.61E-18	162	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-30	164	234	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.6E-23	175	231	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MDFDEEQEEE IEMHEMEPEG NYPPLGSSGM GGGEETAGER KNGGGGGGDG GGGIRYRYRE 60 CLKNHAVGIG GHAVDGCGEF MPAGEDGTLD SLKCAACGCH RNFHRKEEEG DGFSHFHHHH 120 HPHLTAYPSF RPSGYLHVAP HRPLALPSSS RDDDVSNPSS SGGAGAAADG GAGSKKRFRT 180 KFSQEQKDKM LAFAERLEWR IQKHDEEAVQ EFCATTNVRR QVFKVWMHNN KHTLGGLRYC 240 VNVKGRMSEK ERSRDGAVGK MITRGGSGPG GPTGLVVLYS VPVDKHACGA TKFPLPFIPH 300 LSFSTH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-26	174	233	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152292.1	1e-113	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	9e-70	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1U8AKJ6	2e-80	A0A1U8AKJ6_NELNU; zinc-finger homeodomain protein 1-like
STRING	XP_010266504.1	4e-81	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-66	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]