PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000131.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 750aa    MW: 80987.3 Da    PI: 6.5576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000131.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.99e-33287344260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Itr_sc000131.1_g00007.1 287 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSQ-EGHITEIIYKGAHNHPK 344
                              8****************************************.***************85 PP
2WRKY32.81.4e-10500520121
                              ---SS-EEEEEEE--TT-SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                              ldDgy+WrKYGqK+vkg+++p
  Itr_sc000131.1_g00007.1 500 LDDGYRWRKYGQKVVKGNPNP 520
                              59*****************99 PP
3WRKY52.97.4e-175595982059
                              S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY  20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +rsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Itr_sc000131.1_g00007.1 559 STRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 598
                              68*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.68E-26285345IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-28285345IPR003657WRKY domain
SMARTSM007748.6E-37286344IPR003657WRKY domain
PfamPF031063.1E-25287343IPR003657WRKY domain
PROSITE profilePS5081123.479287345IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-34485520IPR003657WRKY domain
SuperFamilySSF1182901.07E-8492521IPR003657WRKY domain
PROSITE profilePS5081129.666495600IPR003657WRKY domain
SMARTSM007741.3E-29500599IPR003657WRKY domain
PfamPF031063.3E-6501521IPR003657WRKY domain
SuperFamilySSF1182905.1E-13554600IPR003657WRKY domain
PfamPF031062.4E-11556598IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-34561600IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MGGFDDHVAI MGDWMPPSPS PRAFFSSILG DDLGTRSAAE PTRENKTGTL VSEPEGYASS  60
RNSDGKGGDQ AGSMSSLSEQ KIGSRGGGLL ERMAARAGFN APRLNTESIR TADLSQNQEV  120
RSPYLTIPPG LSPTTLLDSP VFLSNSLAQP SPTTGKFPFP SSGDIQNSTM FMEASRKSKE  180
NSFDNNDSSS FAFQPVFQTG PSIFPGTFGK VPPSNLARQS FPNVEPTQVY AQNGTIQRPD  240
FSRSSTEKDN GSGNITSEHS PPPDELPDEE TDQRGSGDPN FLGAPADDGY NWRKYGQKQV  300
KGSEYPRSYY KCTHLNCPVK KKVERSQEGH ITEIIYKGAH NHPKPTPNRR SALGSANPLG  360
DMQIENREQA GTGGDGDPIW ANMQKGSGAG DPDWRNDNLE VTTSAPLGSE YCNGSSLQAQ  420
NATQFESGDA VDRSCTFSND EDEDDRGTHG SVSLGYDGEG DESESKRRKI ETYAADMSGA  480
TRAIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP SICSSILSQP VEAQRVNIAS  540
IESRSHDLPY RRVITCHLST RSYYKCTSAG CTVRKHVERA SHDLKSVITT YEGKHNHDVP  600
AARNSSHVNS GVSNSGPSQA TAPNQTHLHR PEPSQLQNTM ARFEGPLSLG SFGLAGRPPQ  660
LGGTPGFGFG MNPQGLTNLA MAGLGANPGK LPVLPVHPYL GQQRPVNHMS FMMSKGEPKM  720
EPVSDPGLNI SNSSSVYQQV MSRLPLGPHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29287601878Probable WRKY transcription factor 4
2lex_A2e-29287601878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0268904e-44AB026890.1 Nicotiana tabacum mRNA for transcription factor NtWRKY4, complete cds.
GenBankAB0635764e-44AB063576.1 Nicotiana tabacum NtWRKY-9 mRNA for WRKY DNA-binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196608.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A484M1Z50.0A0A484M1Z5_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000569520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-178WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]