PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000132.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 365aa    MW: 40583.3 Da    PI: 6.7564
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000132.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-073033352254
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               +yp++e++++L +++gL+ +q+ +WF N+R +
  Itr_sc000132.1_g00015.1 303 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 335
                              59*****************************87 PP
2ELK27.29.2e-10256277122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELKh L+++Y++++ ++++E++
  Itr_sc000132.1_g00015.1 256 ELKHDLKQGYKEKIADIREEIL 277
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.1E-1886130IPR005540KNOX1
PfamPF037903.4E-1688129IPR005540KNOX1
SMARTSM012561.4E-24140196IPR005541KNOX2
PfamPF037911.2E-18146195IPR005541KNOX2
SMARTSM011880.0017256277IPR005539ELK domain
PfamPF037893.5E-5256277IPR005539ELK domain
PROSITE profilePS512139.812256276IPR005539ELK domain
PROSITE profilePS5007111.612276339IPR001356Homeobox domain
SuperFamilySSF466895.99E-16278344IPR009057Homeodomain-like
SMARTSM003891.2E-10278343IPR001356Homeobox domain
CDDcd000862.15E-10279340No hitNo description
Gene3DG3DSA:1.10.10.605.0E-25283340IPR009057Homeodomain-like
PfamPF059209.7E-18296335IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGLQQQQQNA GVLRSMLPEQ PSPSPKSPPP STWLNTTTNN SSLLLHHHFS SSGDSSTTSN  60
HWLSPTADVK KQSPPNNESG ASWERDKCKA ELLNHPLYDQ LLSAHVSCLR IATPVDQLPR  120
IDAQLAQSQN VVAKYSSLLA HPQPPLDDKD LDQFMTHYVV LLSSFKEQLQ QHVRVHAMEA  180
VMACWELEQS LQSLTGVAPG EGTGATMSDD EDDEAGAGAG AGAGGDFFDG VADSMGFGPL  240
VPTETERSLM ERVRQELKHD LKQGYKEKIA DIREEILRKR RAGKLPGDTT SLLKAWWQSH  300
SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHTN PSSSSSSQKT KRKSAAEKSS  360
SEHFM
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170672.10.0PREDICTED: homeobox protein knotted-1-like LET12
SwissprotO223001e-163LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A1J6IDZ71e-177A0A1J6IDZ7_NICAT; Homeobox protein knotted-1-like let12
STRINGXP_009770424.11e-174(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-141KNOTTED1-like homeobox gene 4