PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000134.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 490aa    MW: 53689.1 Da    PI: 5.4638
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000134.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.5e-11207270155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.....kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++gr++A+++d  +   g     ++    +  g ++t+e+Aaka++ a++k++g
  Itr_sc000134.1_g00016.1 207 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtrkgRQggIMIIPGGYDTEEKAAKAYDLAALKYWG 270
                              78*******************65556446765522587788899******************98 PP
2AP248.42.4e-15313364155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Itr_sc000134.1_g00016.1 313 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 364
                              78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-14207280IPR016177DNA-binding domain
PfamPF008474.8E-7207270IPR001471AP2/ERF domain
CDDcd000187.74E-18207280No hitNo description
PROSITE profilePS5103216.871208278IPR001471AP2/ERF domain
SMARTSM003807.1E-22208284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-12208279IPR001471AP2/ERF domain
PRINTSPR003671.2E-6209220IPR001471AP2/ERF domain
CDDcd000182.46E-24313374No hitNo description
SuperFamilySSF541711.05E-17313373IPR016177DNA-binding domain
PfamPF008474.7E-10313364IPR001471AP2/ERF domain
SMARTSM003806.2E-34314378IPR001471AP2/ERF domain
PROSITE profilePS5103219.006314372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18314372IPR001471AP2/ERF domain
PRINTSPR003671.2E-6354374IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSSWLGFSLV QDDGNQNFPG NEEKEEEEEE ETTATNNVGQ QGEGEGGCLA NLMSLPSHGF  60
FDQGASLYDK NMVESPKLED FLGTCYTTTT SQSPEINVNV PPNFTGEHLS SFPPTTAAPP  120
LPFNPAAMYP FLFDNSPSPA TTSSSTSISG LKSWLRQTPP FQPLSLAVTS HPETVASPPL  180
AAVSEAKKRP PPAAPRKSVD TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR  240
QGGIMIIPGG YDTEEKAAKA YDLAALKYWG PTTHINFPLS MYEKELDEMK NMSRQEYVAH  300
LRRKSSGFSR GASVYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI  360
KFRGTSAVTN FDITRYDVKR ICSSTTLIAG DLAKRSSSHG NPLDEFNSGA SPSASSQPIL  420
AVANGDHETD MVWNASTDGG DQHEKDDRTG GESSASRGYY ELQGPQYEEG NCEGDNPSIV  480
HPAPMFTFVE
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193041.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z021e-122CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A061GBL41e-162A0A061GBL4_THECC; AP2 domain-containing transcription factor
STRINGEOY272401e-163(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-104AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]