PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000134.1_g00056.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 172aa    MW: 18978.3 Da    PI: 9.6308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000134.1_g00056.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-201969256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++kGVr +k +g+WvAe+r p++   r r++lg+++taeeAa+a++aa+ +l+g+
  Itr_sc000134.1_g00056.1 19 KFKGVRMRK-WGKWVAEVRQPNS---RDRIWLGSYDTAEEAARAYDAAAVSLRGH 69
                             79*****99.*******888732...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-311977IPR001471AP2/ERF domain
PfamPF008472.5E-141969IPR001471AP2/ERF domain
CDDcd000181.51E-161978No hitNo description
SMARTSM003801.2E-341982IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-221977IPR016177DNA-binding domain
PROSITE profilePS5103222.7871976IPR001471AP2/ERF domain
PRINTSPR003671.0E-92031IPR001471AP2/ERF domain
PRINTSPR003671.0E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVRPKAARAE RRSAAAAGKF KGVRMRKWGK WVAEVRQPNS RDRIWLGSYD TAEEAARAYD  60
AAAVSLRGHT AKLNFPDDPP RIQHGVHLTP PEIQVAASRH ARSNSTPETK QPAVENIFFP  120
PPPVPPEVGG GTSFCDQFSA EACYLVGQER RDEDHHTGAA LSLDSSRIVW NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-181176672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193990.13e-81PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A022QAY14e-42A0A022QAY1_ERYGU; Uncharacterized protein (Fragment)
TrEMBLA0A1J6L2V27e-42A0A1J6L2V2_NICAT; Ethylene-responsive transcription factor erf016
TrEMBLA0A1S4DM948e-42A0A1S4DM94_TOBAC; ethylene-responsive transcription factor ERF016-like
TrEMBLA0A1U7XIG98e-42A0A1U7XIG9_NICSY; ethylene-responsive transcription factor ERF016-like
TrEMBLM1C4W17e-42M1C4W1_SOLTU; Uncharacterized protein
STRINGXP_009791847.11e-42(Nicotiana sylvestris)
STRINGPGSC0003DMT4000598851e-42(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-26ERF family protein