PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000135.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 183aa    MW: 19880.5 Da    PI: 7.3081
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000135.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.33.2e-302103197
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl+ eA+ r+ +Pv+Gavg+++
  Itr_sc000135.1_g00013.1   2 SCNGCRILRKGCNDNCILRQSLqgiesPQAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLLEACGRTVNPVHGAVGLLW 87 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelall 97 
                              +++++++q+++e++l+
  Itr_sc000135.1_g00013.1  88 TGNWHVCQAAVEAVLR 103
                              **********998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1351107IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSCNGCRILR KGCNDNCILR QSLQGIESPQ AQANATVFVA KFFGRAGLMS FLSSVPESQR  60
PALFQSLLLE ACGRTVNPVH GAVGLLWTGN WHVCQAAVEA VLRGGTPPRP LPEFTIPTPS  120
QESDEAAGDL DLGLTTAARM TGNRRVEKKR RADTPSEESE ISTLESGFAY HQSSETNLLR  180
LFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165269.11e-120PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN237e-62LBD38_ARATH; LOB domain-containing protein 38
TrEMBLM1CF431e-86M1CF43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661652e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-64LOB domain-containing protein 38