PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000135.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 261aa    MW: 27978.3 Da    PI: 7.5616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000135.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052104126123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC+ C+k F +   L  H  +H
  Itr_sc000135.1_g00014.1 104 YKCSVCDKAFASYQALGGHKASH 126
                              9***********99998888877 PP
2zf-C2H214.40.00011159181123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+ksF++   L  H r+H
  Itr_sc000135.1_g00014.1 159 HECSICHKSFPTGQALGGHKRRH 181
                              78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.58E-10104126No hitNo description
PfamPF139129.4E-13104128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-4104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097104126IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-10154181No hitNo description
Gene3DG3DSA:3.30.160.605.7E-4157181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-13159183IPR007087Zinc finger, C2H2
SMARTSM003550.039159181IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93159186IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MALEALKAAA AVAPKFPPPL GEVDVHSFKK RRSKRPRTES PQPESEEEYL AACLVMLARG  60
EEPRRRILAG EEAEKTEEKK SEDTPPPPPP RSPPKAVLET VQEYKCSVCD KAFASYQALG  120
GHKASHRKYA ATVSDDNNHP STSSSVAAAG ALNPSGKPHE CSICHKSFPT GQALGGHKRR  180
HYEGKLGGGG SRSGTSSDSV VISSRTPLEF DLNELPPSPE LDLRLSIDCG SGQPNQPSTG  240
DHEVESPMPA KKPRLSFPET A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833KKRRSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165267.11e-118PREDICTED: zinc finger protein ZAT6-like
TrEMBLA0A484LPJ83e-80A0A484LPJ8_9ASTE; Uncharacterized protein
STRINGXP_009772006.11e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.11e-39zinc finger of Arabidopsis thaliana 6