PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000136.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 312aa    MW: 34650.2 Da    PI: 5.3391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000136.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-07198242655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++ r RR+ri ++ +eL +l+P       +K++ ae+ + A +YIk +q
  Itr_sc000136.1_g00008.1 198 SIAARERRRRITEKTQELGKLIPGG-----QKMNTAEMFQAAYKYIKFMQ 242
                              677899*****************86.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.22192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-11195257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-11195256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5198242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-8198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.02E-4208246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MASLSYCSNW GTAHDHHLNF CETLEGSGAM APPPFFAQPP QIVDNNDQLE APAAELLFGL  60
NNHTFVLPEP AVSPFDPVFN SGEFIFSDNY VSLPPPPAAA PEYSIPQEVE FRTHPKRQKL  120
YHNRFPEITE NCFGVFIPNP PLLHDLNPPP LPSPPPLESV LPTFPELPTG TFPAYCAESE  180
VAVKKNDNGA AKTLSAQSIA ARERRRRITE KTQELGKLIP GGQKMNTAEM FQAAYKYIKF  240
MQTQLSVLQS CHHSSQETGE TFMNQELETL VGSSLIQEKL YSNDKCLVPE KFVHSLPNGH  300
ELCQLYQANK SG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152440.11e-178PREDICTED: transcription factor bHLH52-like
TrEMBLA0A328D5H01e-65A0A328D5H0_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-22bHLH family protein