PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000137.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 166aa    MW: 17170.3 Da    PI: 10.9499
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000137.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.9e-193367135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C+ CgttkTplWR gp g+k+LCnaCG++ rk+++
  Itr_sc000137.1_g00018.1 33 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKRRR 67
                             ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.5192763IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-152777IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-122867No hitNo description
Gene3DG3DSA:3.30.50.102.2E-153266IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-123267No hitNo description
PfamPF003201.1E-163367IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403358IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVDLSDRGSE SEDMSSQTPT PERETTNTQI KTCADCGTTK TPLWRGGPAG PKSLCNACGI  60
RSRKRRRALL GLNKDDKKSK KSAAGAGAVT GGGSNKNSSG SSSDSGSSSG GRSGGISPAA  120
GGRRFLPFGR EVALQKPRSQ QARRKMGEVE KAAFLLMALS CGSVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180842.13e-72PREDICTED: GATA transcription factor 16-like
TrEMBLA0A1U8GLM34e-59A0A1U8GLM3_CAPAN; GATA transcription factor 15-like
TrEMBLA0A2G3CIE34e-59A0A2G3CIE3_CAPCH; GATA transcription factor 23
STRINGXP_009590421.13e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-26GATA transcription factor 15