PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000138.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 231aa    MW: 24626.5 Da    PI: 8.2621
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000138.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1771.8e-5528123297
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              +e drflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv++lk+yl
  Itr_sc000138.1_g00005.1  28 KELDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVASLKAYL 113
                              789*********************************************************************************** PP

                    NF-YB  88 kkyrelegek 97 
                              +kyre+egek
  Itr_sc000138.1_g00005.1 114 NKYRETEGEK 123
                              ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-5326144IPR009072Histone-fold
SuperFamilySSF471133.88E-4031144IPR009072Histone-fold
PfamPF008081.3E-273397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-196179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.5E-198098No hitNo description
PRINTSPR006151.5E-1999117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTGKRAHPGS PTGSPLSGNS PPDTGSSKEL DRFLPIANVS RIMKKALPAN AKISKEAKET  60
VQECVSEFIS FITGEASDKC QREKRKTING DDLLWAMTTL GFENYVASLK AYLNKYRETE  120
GEKNSMARID ANNTENSPTS SNSNNNNNNF AIGAASPGGN FINGSFSKII GFGGEAHHHH  180
HLLQMSSNNG GGGGGGMMMS MGKAVKGIDG NVQRPAAMAT TDHDLHGIIE W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4728118292Transcription factor HapC (Eurofung)
4g92_B2e-4728118292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560975e-69EU956097.1 Zea mays clone 1557377 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177294.11e-117PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBLA0A2G3B2506e-72A0A2G3B250_CAPCH; Nuclear transcription factor Y subunit B-3
STRINGXP_004304851.15e-72(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-62nuclear factor Y, subunit B3