PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000140.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 335aa    MW: 36753.7 Da    PI: 8.9249
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000140.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-39138197261
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                              ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s
  Itr_sc000140.1_g00013.1 138 PDKILPCPRCNSKDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGSGRRKNKAS 197
                              7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-29135195IPR003851Zinc finger, Dof-type
PfamPF027016.2E-32140196IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.938142196IPR003851Zinc finger, Dof-type
PROSITE patternPS013610144180IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSTEVKDPAI KLFGKTICLL RDDTLPCSIA ADQPAKRSRS SITTTSRDYK DDAKLGKVYS  60
VQKNTSGEVS ESKHQDDECR NPSGEDSVGA ETSSRTSDDD KAAQNPDKET QCAAGKDVKK  120
DDESETSDSQ DQKNLKKPDK ILPCPRCNSK DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG  180
SMRNVPVGSG RRKNKASATN FRHIMVSDAL HAAQFASLKP NGTVLTFGSD RAVSNESIIP  240
NAWNSAPPPL YGVLAPWSGR WISAPASPDP STPTSPRRLK MEDQAIWSTP GGGGGSLFKA  300
FNSKDGERDR DRNHSLVLQA NPAALSRSLN FQERT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893533e-37AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166230.11e-178PREDICTED: cyclic dof factor 3
TrEMBLA0A068TWC95e-68A0A068TWC9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.27e-46cycling DOF factor 2