PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000140.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 325aa MW: 36743.8 Da PI: 4.9084

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000140.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38	3.6e-12	20	44	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprl+WtpeLH+rF++av+qLGG+e Itr_sc000140.1_g00014.1 20 KPRLKWTPELHQRFIDAVAQLGGAE 44 79*********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-10	18	46	IPR009057	Homeodomain-like
Pfam	PF14379	1.0E-22	114	161	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MALQDLQNKD TNLVLSSDPK PRLKWTPELH QRFIDAVAQL GGAESEYFVL LIISCNQTFI 60 DSSETLTKFR LAKSQELQSY HDDKDEDYKQ SQSQESQIHS ESSDGAQNQM KESMQISQAL 120 QMQMEVQRKL HEQIKVQKHL QLRIEAQGKY LQSVLKKAQE TLARYGPSDH AELAKSELSQ 180 LVSMVDTGCP SSSLSVLTEI GGSITNCTEQ LRTSIGCSLD SSLTSSESSG RKEDTQERHE 240 NKENDERKEN SVELSLMEMH PGHQNGSKDD LSGRKRSRSI ISFDNCVEKP SDKRFQASIN 300 DEKLKKFGFL ENIDLNSECV DDFDT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166229.1	0.0	PREDICTED: myb family transcription factor PHL8-like
TrEMBL	F6HPQ8	4e-96	F6HPQ8_VITVI; Uncharacterized protein
STRING	VIT_01s0026g02550.t01	6e-97	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	5e-49	G2-like family protein