PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000141.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 212aa    MW: 24040.9 Da    PI: 7.2666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000141.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-181865148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
  Itr_sc000141.1_g00006.1 18 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 65
                             79********************************************97 PP
2Myb_DNA-binding54.52.7e-1771114146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Itr_sc000141.1_g00006.1  71 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 114
                              7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-231168IPR009057Homeodomain-like
PROSITE profilePS5129417.2341365IPR017930Myb domain
SuperFamilySSF466892.4E-3015112IPR009057Homeodomain-like
SMARTSM007171.0E-121767IPR001005SANT/Myb domain
PfamPF002493.3E-161865IPR001005SANT/Myb domain
CDDcd001672.22E-102065No hitNo description
PROSITE profilePS5129425.10166120IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2569120IPR009057Homeodomain-like
SMARTSM007173.4E-1570118IPR001005SANT/Myb domain
PfamPF002494.0E-1671114IPR001005SANT/Myb domain
CDDcd001672.63E-1275114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDMKTCCNSS SHDPEIRKGP WTMEEDLILI NYIANHGEGV WNSLARSAGL KRTGKSCRLR  60
WLNYLRPDVR RGNITPEEQL LIMELHAKWG NRWSKIAKHL PGRTDNEIKN FWRTRIQKHL  120
MKQEAARNES TVISGHGSSC EKTDQASSTT SASQLSSIGQ GDIYSSPQSS FACNMEIEAG  180
FQGHHFPSHE YSNDAVWSMD DISWSMQILN GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261312022128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183425.11e-137PREDICTED: myb-related protein 305-like
SwissprotP813911e-85MYB05_ANTMA; Myb-related protein 305
TrEMBLW8CLI77e-90W8CLI7_TOBAC; Transcription factor MYB305
STRINGSolyc02g067760.2.12e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-79myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]