PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000141.1_g00064.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SRS
Protein Properties Length: 365aa    MW: 38381.2 Da    PI: 7.5619
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000141.1_g00064.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.58.6e-691292903154
                   DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkr 76 
                              +g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++            +e ++kr+r
  Itr_sc000141.1_g00064.1 129 AGGISCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQTQENNNnqqslqlrssssRELTPKRHR 214
                              6889****************************************************998887777789999998876667789999 PP

                   DUF702  77 elkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              e+ s+++s+l +++l+s+++   le+ ++P++vs +a f+cvr++svddg++++aYq+av+igGhvfkGiLyd+G+e+
  Itr_sc000141.1_g00064.1 215 EDPSTNNSSLVCARLPSTTPG--LEVGNFPAKVSLTAAFQCVRMRSVDDGDDQYAYQAAVNIGGHVFKGILYDEGPES 290
                              999999*********999866..88999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.8E-65131289IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.8E-27133175IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-24241288IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAGFFSLGGG HGGGGGRGGA AANSQDHRES SSQPNEINPE SWFLYRNDQE MAPAAYKGFE  60
LWQDQPAAAA AAHQIRHHHQ INPLQDLYSS AVGLGVGPSR SAAAAAIDEH SRSAAFMTMM  120
RTGGGSAAAG GISCQDCGNQ AKKDCSHMRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ  180
QLAALQQTQE NNNNQQSLQL RSSSSRELTP KRHREDPSTN NSSLVCARLP STTPGLEVGN  240
FPAKVSLTAA FQCVRMRSVD DGDDQYAYQA AVNIGGHVFK GILYDEGPES QYLTAGESSS  300
GGGSGGTAAA EHNLLPSTAA TSAATTAAAT ASDHQGSGYV DPASIYPAPL STFMAGTFFP  360
PPARS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177203.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotK4B6C91e-108EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A1U8FN761e-123A0A1U8FN76_CAPAN; protein SHI RELATED SEQUENCE 1-like
STRINGXP_009628752.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.17e-68Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]