PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000142.1_g00018.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 489aa MW: 54228.3 Da PI: 5.659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000142.1_g00018.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	289	335	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR ++N+++e L++l+P++ K++ a+++ A+ YI++L Itr_sc000142.1_g00018.1 289 TKHFATERQRRVHLNDKYEALKKLVPNP-----SKNDRASVVHDAIGYINEL 335 78***********************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.367	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.02E-14	287	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.75E-10	289	340	No hit	No description
Pfam	PF00010	8.0E-10	289	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-12	289	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-8	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0052543	Biological Process	callose deposition in cell wall
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MYVESSDGDC FDPSVGEGGG VVVIGEDGFP QNPSFPLEEE EEEGNPYHHH HHHHNSSEHD 60 AAAAMEMELQ QQLNLEMDQC YDNGHHQGDP HFMQKLGHEG GSVVVNNQGL SNWEELGFSH 120 QFHQGSTELQ NNGHHHHHQP QSFQTHPMPE TPAAPDLLNM FPLPRCSPSS LLPNPSFSST 180 FLTSLGLFGD LPAPDNGASP STVVCDPSLL PLNLPPQPPL LRELFHSLPQ GGYGGFGASR 240 SGSLFGEVDE REVNGAFYQT VDGRDFENGV FELTGDMNVL AKNRDGKGTK HFATERQRRV 300 HLNDKYEALK KLVPNPSKND RASVVHDAIG YINELKRTVA ELKILVEKKR CSRERMKRHK 360 TEGCSSMEGG DLKSVEDVDQ SYSGTTLRSS WLQRKSKNTE VDVRIIDDEV TVKLVQQKRI 420 NCLLFVSKAL DELQLDLHHV AGGLIGDYYS FLFNSKICEG STVYASAIAN KLIEVVDKHY 480 TAIAPTSSY

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MYVESSDGDC FDPSVGEGGG VVVIGEDGFP QNPSFPLEEE EEEGNPYHHH HHHHNSSEHD  60
AAAAMEMELQ QQLNLEMDQC YDNGHHQGDP HFMQKLGHEG GSVVVNNQGL SNWEELGFSH  120
QFHQGSTELQ NNGHHHHHQP QSFQTHPMPE TPAAPDLLNM FPLPRCSPSS LLPNPSFSST  180
FLTSLGLFGD LPAPDNGASP STVVCDPSLL PLNLPPQPPL LRELFHSLPQ GGYGGFGASR  240
SGSLFGEVDE REVNGAFYQT VDGRDFENGV FELTGDMNVL AKNRDGKGTK HFATERQRRV  300
HLNDKYEALK KLVPNPSKND RASVVHDAIG YINELKRTVA ELKILVEKKR CSRERMKRHK  360
TEGCSSMEGG DLKSVEDVDQ SYSGTTLRSS WLQRKSKNTE VDVRIIDDEV TVKLVQQKRI  420
NCLLFVSKAL DELQLDLHHV AGGLIGDYYS FLFNSKICEG STVYASAIAN KLIEVVDKHY  480
TAIAPTSSY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192633.1	0.0	PREDICTED: transcription factor bHLH91-like
Refseq	XP_019192641.1	0.0	PREDICTED: transcription factor bHLH91-like
Refseq	XP_019192647.1	0.0	PREDICTED: transcription factor bHLH91-like
Swissprot	Q8GX46	6e-92	BH091_ARATH; Transcription factor bHLH91
TrEMBL	A0A484LHQ3	1e-176	A0A484LHQ3_9ASTE; Uncharacterized protein
STRING	XP_009788149.1	1e-164	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	2e-82	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]