PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000144.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 261aa MW: 28187.8 Da PI: 7.8039

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000144.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.6e-13	56	102	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ K +Ka+ L +Av+++++L Itr_sc000144.1_g00004.1 56 KSHSEAERRRRKRINGHLATLRTLLPNT-----IKTDKASLLAEAVKCVREL 102 69***********************8.....6************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.415	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.81E-11	56	104	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.4E-14	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-11	56	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-13	57	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-12	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	1.24E-5	166	240	No hit	No description
CDD	cd04873	2.14E-4	166	207	No hit	No description
Gene3D	G3DSA:3.30.70.260	8.9E-7	166	210	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MQTFPSFYEV GSCSESYNNF LQGIMGSSEM MMNSLEDTSC VSPRSLAEAK AIAANKSHSE 60 AERRRRKRIN GHLATLRTLL PNTIKTDKAS LLAEAVKCVR ELKKTTTELA AAPESDTDDD 120 SSFSYATAGG GGEVRRTKYM FPSETDELKL SYAAGEEGGG NLKAALCCED RPEIITEVVR 180 ALKSVEGKVV RAEMATVGGR IKCVLWVHVE GLNNGGGGSG GEEVVAAVRR ALKVVVDRSN 240 AVVNSSQSDL TGHKRPRLYQ Y

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182843.1	1e-162	PREDICTED: transcription factor bHLH30-like
Refseq	XP_019182844.1	1e-162	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A1S3ZYB9	1e-105	A0A1S3ZYB9_TOBAC; transcription factor bHLH30-like
STRING	XP_009605433.1	1e-105	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7283	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-36	bHLH family protein